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Scientific Software

Talon3 supports a vast array of scientific applications. This is a multi-interdisciplinary list of state-of-the-art software that is optimized by HPC staff to best take advantage of Talon3 resources. The HPC staff has build all applications to give high throughput.

Biology, Chemistry, Material Science, Physics

Name
AMBER Armadillo BamTools
Beast BLAST+ Bowtie2
BWA Cairo CD-Hit
dDocent DL_PLOY Ea-Utils
Eigen Espresso FastxToolkit
GAMESS Gatk Gaussian
Gromacs Hisat HTSlib
ICU Kallisto Kraken
LAMMPS Minimcas2 Mpiblast
Namd NWChem Oases
Openfoam Ovito Picard
Plink PSI4 RAxML
SAMTOOLS seqprep SOAPdenovo
Stringtie TopHat Trinity
VASP Velvet VMD
WARP

Programming Laguages

Name
Intel GCC Python
R Perl Java
Juila Go Mathematica
MATLAB

Programming Tools

Name
Anaconda Bazel Boost
CMake FFTW glibc
GNU Plot GSL hadoop
HDF5 Lapack MKL
OPENMPI PSSH pyMPI
Readline SageMath Star
Szip Visit Zlib